Software and Webserver

Find us at GitHub

DMRU: Good Bye Bisulfite sequencing ! (Coming Soon)

PTF-Vac: Ab-initio discovery of plant transcription factors binding sites using deep co-learning encoders-decoders Read research article here

PTFSpot : Deep co-learning algorithm to discover transcription factor binding region in plants. Read research article here  Standalone version of the program:  Github link

miWords : A revolutionary algorithm to identify plant pre-miRNAs  Read research article here  Standalone version of the program:  Github link

DeepPlnc : A tool to detect plant lncRNAs through multimodal deep learning on sequential data  Read research article here Standalone version of the program:  Github link

RBPSpot : A tool to identify RBP binding spots in RNA  Read research article here Standalone version of the program:  Github link

miRbiom : A webserver for miRNA profiling and miRNA biogenesis-a resultant of spatio-temporal combinations of several RNA-binding proteins.  Read research article here Standalone version of the program:  Github link

Picro-DB : A comprehensive information database for Picrorhiza kurroa genome and its various genomic components  Read research article here

PRP:  The Plant Regulomics Portal: An ultimate resource for integrated information and study of plant regulatory systems including NGS, Epigenomics, miRNA, Transcription factor and network analysis. Enriched with cutting edge browser and visualization tools, selecting downloading and analytical tools. Read research article here Discontinued

IPFIP : Molecular systems based study information portal for Idiopathic Pulmonary Fibrosis (IPFIP) Read research article here

MauPIR :  Click logo image for redirection of database Read research article here

AssemblyVAlidator : A tool to detect misassembly in de novo assembled contigs Read research article here

The Mythology of "micro"-RNAs. Click logo image for redirection of database Read research article here

pPromotif: A novel and accurate algorithm to identify Transcription Factor Binding Sites on plant genomic sequences. Read research article here

miReader: New version of miReader coming soon Read research article here Download standalone version of miReader

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data. Read research article here Download standalone version of miR-BAG

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications. Read research article here Click logo to download standalone verion of P-TAREF

filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download here the standalone verion   Read research article here

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal. Read research article here