pPromotif

A highly accurate algorithm to identify Transcription Factors binding sites on plant genomics sequences. Download pPromotif here .
Or download @ sourceforge http://sourceforge.net/projects/networkanalysis/

References :
1. Shankar R, Grover D, Brahmachari SK, Mukerji M. Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependent mobile Alu elements, BMC Evol. Biol. 4 (2004) 4:37.

2. miRNAting control of DNA methylation. Ashwani Jha and Ravi Shankar*. J Biosci June 2014.