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Thursday December 05, 2013 18:53:50 pm

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Software and Tool

pPromotif: (Coming soon) A novel and accurate algorithm to identify Transcription Factor Binding Sites on plant gennomic sequences.

miReader: A highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data. Cite: Click here for the PLoS ONE paper.

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.
Cite: Click here for the PLoS ONE paper.

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications.

Cite: Click here fore the paper. BMC Genomics (2011), 12:636.
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filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download
Cite: Click here for the paper.

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal.
Citation: Heikham R and Shankar R, 2010, Journal of Biosciences, 35, 105-118.
Click here for papers citing this work.

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Developed & Maintained by Heikham Russiachand Singh, SCBB, Biotech Division