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Software and Tool

	PepiDB: (Coming soon) Plant methylation database with advanced features to visualize and analyze methylation specific data. Database contains information regarding DNA methylation spots their effect of genome and lots of other informations.
	pPromotif: (Coming soon) A novel and accurate algorithm to identify Transcription Factor Binding Sites on plant gennomic sequences.

miReader: A highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data. Cite: Click here for the PLoS ONE paper.

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.
Cite: Click here for the PLoS ONE paper.

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications.

Cite: Click here fore the paper. BMC Genomics (2011), 12:636.
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filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download
Cite: Click here for the paper.

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal.
Citation: Heikham R and Shankar R, 2010, Journal of Biosciences, 35, 105-118.
Click here for papers citing this work.

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Developed & Maintained by Heikham Russiachand Singh, SCBB, Biotech Division