Software and Tool

	The Mythology of miRNAs Coming soon this year
	PEPI-DB: (Coming soon) Plant DNA Methylation Database by small RNAs for plant Epigenetics configured with Genome Browser, Table Browser, Multiple Genome Viewer tools.
	pPromotif: (Coming soon) A novel and accurate algorithm to identify Transcription Factor Binding Sites on plant genomic sequences.. Cite: Ashwani Jha, Ravi Shankar*; J Biosci June 2014.

miReader: A highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data.   Cite: Click here for the PLoS ONE paper.

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.   Cite: Click here for the PLoS ONE paper.

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications. Cite: Click here fore the paper. BMC Genomics (2011), 12:636. * (Compatible browsers: Firefox, Google Chrome)

filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download   Cite: Click here for the paper.

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal. Citation: Heikham R and Shankar R, 2010, Journal of Biosciences, 35, 105-118. Click here for papers citing this work.