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Friday May 24, 2013 18:30:06 pm

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Software and Tool

AVA(Assembly VAlidator): Coming Soon, A very useful and accurate tool to detect misassemblies in de novo assembled sequences from Next Gen Sequence Assembly.

miReader: Coming soon, a highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data. (Accepted, PLOS ONE)

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.
Cite: Click here for the PLoS ONE paper.

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications.

Cite: Click here fore the paper. BMC Genomics (2011), 12:636.
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filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download
Cite: Click here for the paper.

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal.
Citation: Heikham R and Shankar R, 2010, Journal of Biosciences, 35, 105-118.
Click here for papers citing this work.

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Developed & Maintained by Heikham Russiachand Singh, SCBB, Biotech Division