Software and Tool

	The Mythology of miRNAs. Coming soon this year
	PRD:  The Plant Regulomics Database: An ultimate resource for integrated information and study of plant regulatory systems including NGS, Epigenomics, miRNA, Transcription factor and network analysis. Enriched with cutting edge browser and visualization tools, selecting downloading and analytical tools. (Coming soon)
	pPromotif: A novel and accurate algorithm to identify Transcription Factor Binding Sites on plant genomic sequences.. Cite: Ashwani Jha, Ravi Shankar*; miRNAting control of DNA methylation, J Biosci June 2014. PMID 24845501.

miReader: A highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data.   Cite: Click here for the PLoS ONE paper.

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.   Cite: Click here for the PLoS ONE paper.

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications. Cite: Click here fore the paper. BMC Genomics (2011), 12:636. * (Compatible browsers: Firefox, Google Chrome)

filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download   Cite: Click here for the paper.

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal. Citation: Heikham R and Shankar R, 2010, Journal of Biosciences, 35, 105-118. Click here for papers citing this work.