Software and Tool

RBPSpot : A tool to identify RBP binding spots in RNA. (coming Soon)

IPFIP : Molecular systems based study information portal for Idiopathic Pulmonary Fibrosis (IPFIP)  Cite: IPFIP (Scientific Reports, April 2017)

MauPIR :  Click logo image for redirection of database Cite: MauPIR  (Journal of proteome research; May 10, 2016.)

AssemblyVAlidator : A tool to detect misassembly in de novo assembled contigs   Cite: AssemblyVAlidator  (Journal of Biosciences; September, 2016)

The Mythology of "micro"-RNAs. Click logo image for redirection of database Cite: The Mythology of "micro"-RNAs (Nucleic Acids Research, 2015, doi: 10.1093/nar/gkv871)

PRP:  The Plant Regulomics Portal: An ultimate resource for integrated information and study of plant regulatory systems including NGS, Epigenomics, miRNA, Transcription factor and network analysis. Enriched with cutting edge browser and visualization tools, selecting downloading and analytical tools. (coming soon)

pPromotif: A novel and accurate algorithm to identify Transcription Factor Binding Sites on plant genomic sequences. Cite:pPromotif (J Biosci June 2014. PMID 24845501.)

miReader: A highly accurate cutting edge algorithm to identify mature miRNAs from NGS read data.   Cite: Click here for the PLoS ONE paper.

miR-BAG: An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.   Cite: Click here for the PLoS ONE paper.

p-TAREF: A concurrent application for fast and accurate plant miRNA target identifications. Cite: Click here fore the paper. BMC Genomics (2011), 12:636. * (Compatible browsers: Firefox, Google Chrome)

filteR: Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning. (Coded in Qt, C++, Parallel library used:OpenMP). Download   Cite: Click here for the paper.

Picrorhiza kurrooa Information House

TAREF: A tool to Refine microRNAs target prediction in animal. Citation: Heikham R and Shankar R, 2010, Journal of Biosciences, 35, 105-118. Click here for papers citing this work.