M.Sc. in Bioinformatics, Center of Bioinformatics, University of Allahabad, Prayagraj, UP

Deep learning, Computational Regulomics, and Big Data Analytics.

Publications:

1. Deep co-learning on transcription factors and their binding regions attains impeccable universality in plants
   Sagar Gupta, Veerbhan Kesarwani, Umesh Bhati, Jyoti, Ravi Shankar*
   bioRxiv, 2024  Read research article here


2. PTF-Vac: Ab-initio discovery of plant transcription factors binding sites using deep co-learning encoders-decoders
   Sagar Gupta, Jyoti, Umesh Bhati, Veerbhan Kesarwani, Ravi Shankar*
   bioRxiv, 2024  Read research article here


3. Comprehensive evaluation of plant transcription factors binding sites discovery tools
   Jyoti, Ritu, Sagar Gupta, Ravi Shankar*
   bioRxiv, 2023  Read research article here 


4. miWords: Transformers based composite deep-learning for highly accurate discovery of pre-miRNA regions across plant genomes
   Sagar Gupta, Ravi Shankar*
   Briefings in Bioinformatics, 2023 Read research article here


5. DeepPlnc: Bi-modal Deep Learning for Highly Accurate Plant lncRNA Discovery
   Ritu^†, Sagar Gupta^†, Nitesh Kumar Sharma, Ravi Shankar*
   Genomics, 2022  Read research article here 


6. RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery
   Nitesh Kumar Sharma^†, Sagar Gupta, Prakash Kumar, Ashwani Kumar, Upendra Kumar Pradhan, Ravi Shankar*
   iScience, 2021  Read research article here 


7. miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles
   Upendra Kumar Pradhan^†, Nitesh Kumar Sharma^†, Prakash Kumar, Ashwani Kumar, Sagar Gupta, Ravi Shankar*
   PLoS ONE, 2021  Read research article here