M.Sc. in Bioinformatics, Center of Bioinformatics, University of Allahabad, Prayagraj, UP

Deep learning, Computational Regulomics and Epigenomics, and Big Data Analytics.

Publications:

1. miWords: Transformers based composite deep-learning for highly accurate discovery of pre-miRNA regions across plant genomes
   Sagar Gupta^†, Ravi Shankar*
   Briefings in Bioinformatics, 2023 Read research article here


2. DeepPlnc: Bi-modal Deep Learning for Highly Accurate Plant lncRNA Discovery
   Ritu^†, Sagar Gupta^†, Nitesh Kumar Sharma, Ravi Shankar*
   Genomics, 2022  Read research article here 


3. RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery
   Nitesh Kumar Sharma^†, Sagar Gupta, Prakash Kumar, Ashwani Kumar, Upendra Kumar Pradhan, Ravi Shankar*
   iScience, 2021  Read research article here 


4. miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles
   Upendra Kumar Pradhan^†, Nitesh Kumar Sharma^†, Prakash Kumar, Ashwani Kumar, Sagar Gupta, Ravi Shankar*
   PLoS ONE, 2021  Read research article here