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Qualification:

M.Sc Bioinformatics, Jamia Millia Islamia, Delhi

Ph.D Bioinformatics, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 2021.

Area of Interest:

NGS and Highthroughput Computing.

Publications:

† Equally contributed * Corresponding Author

DeepPlnc: Bi-modal Deep Learning for Highly Accurate Plant lncRNA Discovery
Ritu^†, Sagar Gupta^†, Nitesh Kumar Sharma, Ravi Shankar*
Genomics, 2022 Read research article here

RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery
Nitesh Kumar Sharma^†, Sagar Gupta, Prakash Kumar, Ashwani Kumar, Upendra Kumar Pradhan, Ravi Shankar*
iScience, 2021 Read research article here

miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles
Upendra Kumar Pradhan^†, Nitesh Kumar Sharma^†, Prakash Kumar, Ashwani Kumar, Sagar Gupta, Ravi Shankar*
PLoS ONE, 2021 Read research article here

The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalaya
Tanvi Sharma^†, Nitesh Kumar Sharma^†, Prakash Kumar, Ganesh Panzade, Tanuja Rana, Mohit Kumar Swarnkar, Anil Kumar Singh, Dharam Singh, Ravi Shankar*, Sanjay Kumar*
Scientific Reports, 2021 Read research article here

Comparative transcriptome analysis of Rheum australe, an endangered medicinal herb, in its natural habitat and those grown in controlled growth chambers
Deep Mala^†, Supriya Awasthi^†, Nitesh Kumar Sharma, Mohit Kumar Swarnkar, Ravi Shankar*, Sanjay Kumar*
Scientific Reports, 2020 Read research article here

Plant Regulomics Portal (PRP): A comprehensive integrated regulatory information and analysis portal for plant genomes
Ganesh Panzade^†, Indu Gangwar, Supriya Awasthi, Nitesh Sharma, Ravi Shankar*
Database, Volume 2019, 2019, baz130, doi.org/10.1093/database/baz130 Read research article here

De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Nisha Dhiman^†, Nitesh Kumar Sharma^†, Pooja Thapa^†, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar* & Amita Bhattacharya*
Scientific Reports, 2019;doi:10.1038/s41598-019-49446-w Read research article here

Transcriptome and Co-Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.
Parul Goel^†, Nitesh Kumar Sharma^†, Monika Bhuria, Vishal Sharma, Rohit Chauhan, Shivalika Pathania, Mohit Kumar Swarnkar, Vandna Chawla, Vishal Acharya, Ravi Shankar* and Anil Kumar Singh*
Scientific Reports, 2018;doi:10.1038/s41598-018-25826-6 Read research article here

Detecting the Molecular System Signatures of Idiopathic Pulmonary Fibrosis through Integrated Genomic Analysis
Indu Gangwar^†, Nitesh Kumar Sharma^†, Ganesh Panzade, Supriya Awasthi, Anurag Agrawal, and Ravi Shankar*
Scientific Reports, 2017;doi:10.1038/s41598-017-01765-6 Read research article here

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