Ph.D Bioinformatics, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 2021.
Area of Interest:
NGS and Highthroughput Computing.
† Equally contributed* Corresponding Author
DeepPlnc: Discovering plant lncRNAs through multimodal deep learning on sequential data
Ritu†, Sagar Gupta†, Nitesh Kumar Sharma, Ravi Shankar*
bioRxiv, 2021 Read research article here
RBPSpot: Learning on Appropriate Contextual Information for RBP Binding Sites Discovery Nitesh Kumar Sharma†, Sagar Gupta, Prakash Kumar, Ashwani Kumar, Upendra Kumar Pradhan, Ravi Shankar*
iScience, 2021 Read research article here
miRbiom: Machine-Learning on Bayesian Causal Nets of RBP-miRNA interactions successfully predicts miRNA profiles
Upendra Kumar Pradhan†, Nitesh Kumar Sharma†, Prakash Kumar, Ashwani Kumar, Sagar Gupta, Ravi Shankar*
PLoS ONE, 2021 Read research article here
The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalaya
Tanvi Sharma†, Nitesh Kumar Sharma†, Prakash Kumar, Ganesh Panzade, Tanuja Rana, Mohit Kumar Swarnkar, Anil Kumar Singh, Dharam Singh, Ravi Shankar*, Sanjay Kumar*
Scientific Reports, 2021 Read research article here
Comparative transcriptome analysis of Rheum australe, an endangered medicinal herb, in its natural habitat and those grown in controlled growth chambers
Deep Mala†, Supriya Awasthi†, Nitesh Kumar Sharma, Mohit Kumar Swarnkar, Ravi Shankar*, Sanjay Kumar*
Scientific Reports, 2020 Read research article here
Plant Regulomics Portal (PRP): A comprehensive integrated regulatory information and analysis portal for plant genomes
Ganesh Panzade†, Indu Gangwar, Supriya Awasthi, Nitesh Sharma, Ravi Shankar*
Database, Volume 2019, 2019, baz130, doi.org/10.1093/database/baz130 Read research article here
De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Nisha Dhiman†, Nitesh Kumar Sharma†, Pooja Thapa†, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar* & Amita Bhattacharya*
Scientific Reports, 2019;doi:10.1038/s41598-019-49446-wRead research article here
Transcriptome and Co-Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.
Parul Goel†, Nitesh Kumar Sharma†, Monika Bhuria, Vishal Sharma, Rohit Chauhan, Shivalika Pathania, Mohit Kumar Swarnkar, Vandna Chawla, Vishal Acharya, Ravi Shankar* and Anil Kumar Singh*
Scientific Reports, 2018;doi:10.1038/s41598-018-25826-6Read research article here
Detecting the Molecular System Signatures of Idiopathic Pulmonary Fibrosis through Integrated Genomic Analysis
Indu Gangwar†, Nitesh Kumar Sharma†, Ganesh Panzade, Supriya Awasthi, Anurag Agrawal, and Ravi Shankar*
Scientific Reports, 2017;doi:10.1038/s41598-017-01765-6Read research article here
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