Quick Start

Get started with a test sample by running the ProMaya Nextflow pipeline.

1. Prepare Environment

See the Setup Guide for detailed installation instructions. We recommend using Conda:

conda activate promaya

2. Test Run

nextflow run main.nf \
  --repo_dir /path/to/promaya \
  --checkpoint /path/to/checkpoints/best_model.pt \
  --samplesheet assets/samplesheet.csv \
  --outdir results/promaya_nf \
  -profile conda