I am interested in the development of programming paradigms in sequence analysis specifically the sparse and non-coding seqments of genome. Also interested in Next Generation Sequencing and epigenomics.
Area of specialization:
† Equally contributed * Corresponding Author
De-novo sequence assembly and transcriptome analysis of Venturia inaequalis, the deadly apple scab pathogen. Karnika Thakur†,Vandna Chawla†, Shammi Bhatti, Mohit Kumar Swarnkar,, Jagdeep Kaur, Ravi Shankar*, Gopaljee Jha*. PLoS ONE 8(1): e53937. doi:10.1371/journal.pone.0053937
De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. Parul Gahlan†, Heikham Russiachand Singh†,Ravi Shankar1*, Niharika Sharma, Anita Kumari, Vandna Chawla, Paramvir Singh Ahuja, Sanjay Kumar2*. BMC Genomics, 13:126, March, 2012.
Comparative Transcriptome Analysis of Chinary, Assamica and Cambod tea (Camellia sinensis) Types during Development and Seasonal Variation using RNA-seq Technology. (Accepted)
Ajay Kumar†, Vandna Chawla†, Eshita Sharma, Pallavi Mahajan, Ravi Shankar*, Sudesh Kumar Yadav*
Genome-wide regulatory dynamics of G-Quadruplexes in human malaria parasite Plasmodium falciparum.
Deeksha Bhartiya†, Vandna Chawla†, Sourav Ghosh, Ravi Shankar, Niti Kumar
Genomics, Oct 2016, doi.org/10.1016/j.ygeno.2016.10.004 Read the paper here.
Developed by Heikham Russiachand Singh (past member). Maintained by Ganesh Panzade SCBB, Biotech Division.