M.Tech. in Biochemical Engineering, IIT-BHU, Varanasi, UP

Computational network biology

Publications:

1. Genome-wide identification, characterization, and expression pattern analysis of the glyoxalase gene family in Phyllostachys pubescens during abiotic stresses
   Anita Kumari^†, Umesh Bhati^†, Ravi Shankar, Sudesh Kumar Yadav, Sudhir Kumar Sopory, Rohit Joshi*
   BMC Plant Biology (Accepted), 2025


2. Conference Poster: The Genomics Armoury @ The Himalayan Centre for High-throughput Computational Biology
   Sagar Gupta, Umesh Bhati, Jyoti, Veerbhan Kesarwani, Akanksha Sharma, Anchit Kumar, Ravi Shankar*
   Genomics India Conference, IISc, Bengaluru, 2025  Find the conference poster here


3. Decoding stress specific transcriptional regulation by causality aware Graph-Transformer deep learning
   Umesh Bhati, Akanksha Sharma, Sagar Gupta, Anchit Kumar, Upendra Kumar Pradhan, Ravi Shankar*
   Current Plant Biology, 2025  Read the research article here


4. PTFSpot: deep co-learning on transcription factors and their binding regions attains impeccable universality in plants
   Sagar Gupta, Veerbhan Kesarwani, Umesh Bhati, Jyoti, Ravi Shankar*
   Briefings in Bioinformatics, 2024  Read the research article here


5. PTF-Vac: Ab-initio discovery of plant transcription factors binding sites using explainable and generative deep co-learning encoders-decoders
   Sagar Gupta, Jyoti, Umesh Bhati, Veerbhan Kesarwani, Akanksha Sharma, Ravi Shankar*
   bioRxiv, 2024  Read the research article here