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About IHBT

Research

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Thursday April 23, 2026 2:52:50 am

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Research

Software & Web server

Lab Members

Publications

Workshop/Conference

GitHub

Careers

Qualification:

M.Sc. in Bioinformatics, Central University of Punjab, Bathinda, Punjab

Area of Interest:

Transcriptional Regulation in Plants

Publications:

† Equally contributed * Corresponding Author

PTF-Vāc: An explainable and generative deep co-learning encoders-decoders system for ab-initio discovery of plant transcription factor binding sites
Sagar Gupta, Jyoti, Umesh Bhati, Veerbhan Kesarwani, Akanksha Sharma, Ravi Shankar*
Plant Communications, 2025 Read the research article here

Comprehensive analysis of computational approaches in plant transcription factors binding regions discovery
Jyoti, Ritu, Sagar Gupta, Ravi Shankar*
Heliyon, 2024 Read the research article here

PTFSpot: deep co-learning on transcription factors and their binding regions attains impeccable universality in plants
Sagar Gupta, Veerbhan Kesarwani, Umesh Bhati, Jyoti, Ravi Shankar*
Briefings in Bioinformatics, 2024 Read the research article here

Conference Poster: Comprehensive analysis of computational approaches in plant transcription factors binding regions discovery
Jyoti, Ritu, Sagar Gupta, Ravi Shankar*
GIW XXXIV ISCB-Asia,
International Conference on Genome Informatics ISCB-Asia, Hong Kong, 2025
Find the conference poster here

Conference Poster: Decoding Plant TF-DNA Interactions Using PTFSpot and PTF-Vac: A Universal and Data-Independent Deep Learning Approach
Sagar Gupta, Jyoti, Umesh Bhati, Veerbhan Kesarwani, Akanksha Sharma, Ravi Shankar*
22nd Horizons in Molecular Biology Symposium,
Max Planck Institute for Multidisciplinary Sciences, Gottingen, Germany, 2025
Find the conference poster here

Conference Poster: The Genomics Armoury @ The Himalayan Centre for High-throughput Computational Biology
Sagar Gupta, Umesh Bhati, Jyoti, Veerbhan Kesarwani, Akanksha Sharma, Anchit Kumar, Ravi Shankar*
Genomics India Conference, IISc, Bengaluru, 2025 Find the conference poster here

Conference Talk: Evaluating machine learning and deep learning-based algorithms for discovery of transcription factor binding sites
Jyoti
Student Seminar Series, CSIR-IHBT, Palampur, 2022 Find the conference talk pdf here

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