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Friday March 20, 2026 8:49:11 am

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Research

Software & Web server

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Publications

Workshop/Conference

GitHub

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Qualification:

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Area of Interest:

Deep Learning and Computational biology.

Publications:

† Equally contributed * Corresponding Author

DMRU: Generative deep learning to unravel condition-specific cytosine methylation in plants
Sagar Gupta, Anchit Kumar, Veerbhan Kesarwani, Umesh Bhati, Ravi Shankar*
Briefings in Bioinformatics, 2025 Read the research article here

Decoding stress specific transcriptional regulation by causality aware Graph-Transformer deep learning
Umesh Bhati, Akanksha Sharma, Sagar Gupta, Anchit Kumar, Upendra Kumar Pradhan, Ravi Shankar*
Current Plant Biology, 2025 Read the research article here

Conference Talk: p-TAREF2.0: Employing deep learning for reliable miRNA target identification in plants
Anchit Kumar, Sagar Gupta, Umesh Bhati, Jyoti, Ravi Shankar*
9th International Conference on Computational Biology and Bioinformatics (ICCBB),
The University of Tokyo, Tokyo, Japan, 2025
Find the conference talk pdf here

Conference Poster: DMRU: Generative Deep-Learning to unravel condition specific cytosine methylations in plants
Sagar Gupta, Anchit Kumar, Veerbhan Kesarwani, Umesh Bhati, Ravi Shankar*
GIW XXXIV ISCB-Asia,
International Conference on Genome Informatics ISCB-Asia, Hong Kong, 2025
Find the conference poster here

Conference Poster: Deep-Learning on condition specific expression profiles reveal critical cytosines in gene regulation
Veerbhan Kesarwani, Anchit Kumar, Akanksha Sharma, Sagar Gupta, Ravi Shankar*
Plant evolution: from origins to diversification on land,
Gregor Mendel Institute for Molecular Plant Biology, Vienna, Austria, 2025
Find the conference poster here

Conference Poster: Decoding stress specific transcriptional regulation by causality aware Graph-Transformer deep learning
Umesh Bhati, Akanksha Sharma, Sagar Gupta, Anchit Kumar, Upendra Kumar Pradhan, Ravi Shankar*
22nd Horizons in Molecular Biology Symposium,
Max Planck Institute for Multidisciplinary Sciences, Gottingen, Germany, 2025
Find the conference poster here

Conference Poster: The Genomics Armoury @ The Himalayan Centre for High-throughput Computational Biology
Sagar Gupta, Umesh Bhati, Jyoti, Veerbhan Kesarwani, Akanksha Sharma, Anchit Kumar, Ravi Shankar*
Genomics India Conference, IISc, Bengaluru, 2025 Find the conference poster here

Explainable Deep-Learning on condition specific expression profiles reveals critical cytosines in gene regulation
Veerbhan Kesarwani, Anchit Kumar, Akanksha Sharma, Sagar Gupta, Kirti Pandey, Gaurav Zinta, Ravi Shankar*
bioRxiv, 2026 Read the research article here

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