Explainable Generative Deep Learning for plant transcription factor binding sites discovery
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Implementation
PTFSpot
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Comparison between motif identified by PTF-Vac and motif provided by user:
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Protein sequence
MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQ RLHTKKPSSSPPKLLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPLRDDDFCSDL LFSAAPTATATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRGGE SGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGK AVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEET KQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLD EAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMP FPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGY TDPYQQFRGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNHTTG
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Protein structure
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Consensus motif logo
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Click to download consensus motif logo:
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Click to download position weight matrix:
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Comparison between motif identified by PTF-Vac and motif provided by user
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