GO description GO terms Number of srRNAs
Seed Number of miRNAs Number of Genes
Nucleotide-excision repair complex
GO:0000109
1259
Nucleotide-excision repair factor 1 complex
GO:0000110
631
Histone deacetylase complex
GO:0000118
1884
RNA polymerase I transcription factor complex
GO:0000120
1489
Histone acetyltransferase complex
GO:0000123
1435
SAGA complex
GO:0000124
504
Transcription factor TFIIIC complex
GO:0000127
58
Golgi cis cisterna
GO:0000137
811
Golgi membrane
GO:0000139
6824
Exocyst
GO:0000145
879
Ubiquitin ligase complex
GO:0000151
2763
Nuclear ubiquitin ligase complex
GO:0000152
198
Protein phosphatase type 2A complex
GO:0000159
2116
Protein phosphatase type 1 complex
GO:0000164
753
Ribonuclease MRP complex
GO:0000172
10
Nuclear exosome (RNase complex)
GO:0000176
1064
Cytoplasmic exosome (RNase complex)
GO:0000177
1788
Exosome (RNase complex)
GO:0000178
1876
TRNA-intron endonuclease complex
GO:0000214
122
Vacuolar proton-transporting V-type ATPase, V0 domain
GO:0000220
1023
Nuclear chromosome
GO:0000228
2622
Astral microtubule
GO:0000235
1125
Pericentriolar material
GO:0000242
3220
Mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0000276
837
Cyclin-dependent protein kinase holoenzyme complex
GO:0000307
729
Cytoplasmic cyclin-dependent protein kinase holoenzyme complex
GO:0000308
370
Transcription export complex
GO:0000346
21
Pre-autophagosomal structure
GO:0000407
909
Autophagic vacuole membrane
GO:0000421
2303
Core TFIIH complex
GO:0000439
1644
MIS12/MIND type complex
GO:0000444
1607
Proteasome complex
GO:0000502
1991
Glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0000506
9
Chromosome, centromeric region
GO:0000775
3047
Kinetochore
GO:0000776
3663
Condensed chromosome kinetochore
GO:0000777
3990
Condensed nuclear chromosome kinetochore
GO:0000778
14
Condensed chromosome, centromeric region
GO:0000779
1463
Condensed nuclear chromosome, centromeric region
GO:0000780
1752
Chromosome, telomeric region
GO:0000781
3648
Nuclear telomere cap complex
GO:0000783
1295
Nuclear chromosome, telomeric region
GO:0000784
1928
Chromatin
GO:0000785
3721
Nucleosome
GO:0000786
1285
Nuclear nucleosome
GO:0000788
908
Nuclear chromatin
GO:0000790
4513
Euchromatin
GO:0000791
777
Heterochromatin
GO:0000792
1551
Condensed chromosome
GO:0000793
1983
Condensed nuclear chromosome
GO:0000794
3251
Synaptonemal complex
GO:0000795
1457
Condensin complex
GO:0000796
727
Condensin core heterodimer
GO:0000797
585
Lateral element
GO:0000800
773
Central element
GO:0000801
350
Swr1 complex
GO:0000812
35
ESCRT I complex
GO:0000813
507
Hrd1p ubiquitin ligase complex
GO:0000836
10
Spindle pole
GO:0000922
4155
Gamma-tubulin complex
GO:0000930
927
Cytoplasmic mRNA processing body
GO:0000932
3479
GARP complex
GO:0000938
2040
Condensed chromosome outer kinetochore
GO:0000940
1547
Prp19 complex
GO:0000974
539
Voltage-gated sodium channel complex
GO:0001518
1870
Outer dense fiber
GO:0001520
589
Microfibril
GO:0001527
920
Cornified envelope
GO:0001533
47
Fibrillar center
GO:0001650
36
Acrosomal vesicle
GO:0001669
3681
Male germ cell nucleus
GO:0001673
1107
Stress fiber
GO:0001725
4204
Ruffle
GO:0001726
4738
Sex chromatin
GO:0001739
9
Barr body
GO:0001740
67
XY body
GO:0001741
321
Photoreceptor outer segment
GO:0001750
3181
Immunological synapse
GO:0001772
1927
Phagocytic cup
GO:0001891
527
Photoreceptor inner segment
GO:0001917
3328
Uropod
GO:0001931
2525
Female pronucleus
GO:0001939
29
Male pronucleus
GO:0001940
27
Acrosomal membrane
GO:0002080
1117
Caveolar macromolecular signaling complex
GO:0002095
20
Podosome
GO:0002102
673
Semaphorin receptor complex
GO:0002116
70
Polycystin complex
GO:0002133
222
Stereocilia ankle link complex
GO:0002142
34
Palmitoyltransferase complex
GO:0002178
13
Sperm protein complex
GO:0002199
15
NA
GO:0002947
515
Cellular_component
GO:0005575
6752
Extracellular region
GO:0005576
7844
Fibrinogen complex
GO:0005577
806
Proteinaceous extracellular matrix
GO:0005578
4563
Membrane attack complex
GO:0005579
551
Collagen
GO:0005581
3148
Fibrillar collagen
GO:0005583
18
Collagen type I
GO:0005584
16
Collagen type IV
GO:0005587
26
Collagen type V
GO:0005588
32
Collagen type VI
GO:0005589
16
Collagen type XI
GO:0005592
13
Collagen type XII
GO:0005595
14
Basement membrane
GO:0005604
3723
Basal lamina
GO:0005605
1103
Laminin-1 complex
GO:0005606
183
Laminin-2 complex
GO:0005607
558
Laminin-5 complex
GO:0005610
576
Interstitial matrix
GO:0005614
277
Extracellular space
GO:0005615
7698
Intracellular
GO:0005622
7659
Cell
GO:0005623
185
Nucleus
GO:0005634
10064
Nuclear envelope
GO:0005635
4609
Nuclear inner membrane
GO:0005637
2561
Lamin filament
GO:0005638
122
Integral to nuclear inner membrane
GO:0005639
64
Nuclear outer membrane
GO:0005640
649
Nuclear envelope lumen
GO:0005641
910
Annulate lamellae
GO:0005642
10
Nuclear pore
GO:0005643
2562
Nuclear lamina
GO:0005652
648
Nucleoplasm
GO:0005654
9191
Nucleolar ribonuclease P complex
GO:0005655
891
Replication fork
GO:0005657
2612
DNA replication factor A complex
GO:0005662
2338
DNA replication factor C complex
GO:0005663
962
Nuclear origin of replication recognition complex
GO:0005664
1025
DNA-directed RNA polymerase II, core complex
GO:0005665
785
DNA-directed RNA polymerase III complex
GO:0005666
1517
Transcription factor complex
GO:0005667
5323
Transcription factor TFIID complex
GO:0005669
2880
Ada2/Gcn5/Ada3 transcription activator complex
GO:0005671
1666
Transcription factor TFIIA complex
GO:0005672
79
Holo TFIIH complex
GO:0005675
1510
Chromatin silencing complex
GO:0005677
204
Anaphase-promoting complex
GO:0005680
320
Spliceosomal complex
GO:0005681
3258
U5 snRNP
GO:0005682
12
U7 snRNP
GO:0005683
925
U1 snRNP
GO:0005685
934
U4 snRNP
GO:0005687
923
U12-type spliceosomal complex
GO:0005689
1506
Chromosome
GO:0005694
4198
Telomerase holoenzyme complex
GO:0005697
1195
Nuclear euchromatin
GO:0005719
235
Nuclear heterochromatin
GO:0005720
2323
Centromeric heterochromatin
GO:0005721
86
Perichromatin fibrils
GO:0005726
22
Nucleolus
GO:0005730
7697
Small nucleolar ribonucleoprotein complex
GO:0005732
12
DNA-directed RNA polymerase I complex
GO:0005736
1733
Cytoplasm
GO:0005737
10042
Mitochondrion
GO:0005739
8192
Mitochondrial envelope
GO:0005740
335
Mitochondrial outer membrane
GO:0005741
5186
Mitochondrial outer membrane translocase complex
GO:0005742
43
Mitochondrial inner membrane
GO:0005743
6085
Mitochondrial inner membrane presequence translocase complex
GO:0005744
1043
Mitochondrial respiratory chain
GO:0005746
1340
Mitochondrial respiratory chain complex I
GO:0005747
2220
Mitochondrial respiratory chain complex II
GO:0005749
106
Mitochondrial respiratory chain complex III
GO:0005750
735
Mitochondrial respiratory chain complex IV
GO:0005751
312
Mitochondrial proton-transporting ATP synthase complex
GO:0005753
590
Mitochondrial intermembrane space
GO:0005758
3859
Mitochondrial matrix
GO:0005759
6092
Mitochondrial ribosome
GO:0005761
2195
Mitochondrial large ribosomal subunit
GO:0005762
1087
Mitochondrial small ribosomal subunit
GO:0005763
936
Lysosome
GO:0005764
5625
Lysosomal membrane
GO:0005765
5917
Endosome
GO:0005768
5704
Early endosome
GO:0005769
5396
Late endosome
GO:0005770
4783
Multivesicular body
GO:0005771
1686
Vacuole
GO:0005773
2346
Vacuolar membrane
GO:0005774
1138
Autophagic vacuole
GO:0005776
2409
Peroxisome
GO:0005777
4793
Peroxisomal membrane
GO:0005778
4772
Integral to peroxisomal membrane
GO:0005779
2632
Peroxisomal matrix
GO:0005782
2262
Endoplasmic reticulum
GO:0005783
7463
Signal recognition particle receptor complex
GO:0005785
93
Signal recognition particle, endoplasmic reticulum targeting
GO:0005786
105
Signal peptidase complex
GO:0005787
675
Endoplasmic reticulum lumen
GO:0005788
4827
Endoplasmic reticulum membrane
GO:0005789
7439
Smooth endoplasmic reticulum
GO:0005790
543
Rough endoplasmic reticulum
GO:0005791
3036
Endoplasmic reticulum-Golgi intermediate compartment
GO:0005793
4606
Golgi apparatus
GO:0005794
7759
Golgi stack
GO:0005795
438
Golgi lumen
GO:0005796
2715
Golgi-associated vesicle
GO:0005798
602
Cis-Golgi network
GO:0005801
3801
Trans-Golgi network
GO:0005802
4449
Lipid particle
GO:0005811
3558
Centrosome
GO:0005813
6768
Centriole
GO:0005814
3808
Microtubule organizing center
GO:0005815
4776
Spindle
GO:0005819
4473
Actomyosin contractile ring
GO:0005826
16
Polar microtubule
GO:0005827
17
Kinetochore microtubule
GO:0005828
773
Cytosol
GO:0005829
9364
Chaperonin-containing T-complex
GO:0005832
12
Hemoglobin complex
GO:0005833
1173
Heterotrimeric G-protein complex
GO:0005834
2579
Proteasome regulatory particle
GO:0005838
269
Proteasome core complex
GO:0005839
1617
Ribosome
GO:0005840
4680
Polysome
GO:0005844
1044
MRNA cap binding complex
GO:0005845
1091
Nuclear cap binding complex
GO:0005846
762
MRNA cleavage and polyadenylation specificity factor complex
GO:0005847
1297
MRNA cleavage factor complex
GO:0005849
19
Eukaryotic translation initiation factor 2 complex
GO:0005850
683
Eukaryotic translation initiation factor 2B complex
GO:0005851
148
Eukaryotic translation initiation factor 3 complex
GO:0005852
31
Eukaryotic translation elongation factor 1 complex
GO:0005853
176
Cytoskeleton
GO:0005856
6595
Axonemal dynein complex
GO:0005858
51
Muscle myosin complex
GO:0005859
119
Troponin complex
GO:0005861
7
Muscle thin filament tropomyosin
GO:0005862
2637
Striated muscle myosin thick filament
GO:0005863
9
Striated muscle thin filament
GO:0005865
886
Cytoplasmic dynein complex
GO:0005868
160
Dynactin complex
GO:0005869
577
Kinesin complex
GO:0005871
3988
Microtubule
GO:0005874
6182
Microtubule associated complex
GO:0005875
2969
Spindle microtubule
GO:0005876
3883
Axonemal microtubule
GO:0005879
26
Cytoplasmic microtubule
GO:0005881
1367
Intermediate filament
GO:0005882
1867
Neurofilament
GO:0005883
35
Actin filament
GO:0005884
2368
Arp2/3 protein complex
GO:0005885
9
Plasma membrane
GO:0005886
9713
Integral to plasma membrane
GO:0005887
7937
Hydrogen:potassium-exchanging ATPase complex
GO:0005889
758
Sodium:potassium-exchanging ATPase complex
GO:0005890
1811
Voltage-gated calcium channel complex
GO:0005891
1984
Acetylcholine-gated channel complex
GO:0005892
1921
Interleukin-6 receptor complex
GO:0005896
1363
Interleukin-13 receptor complex
GO:0005898
419
Insulin receptor complex
GO:0005899
137
Oncostatin-M receptor complex
GO:0005900
886
Caveola
GO:0005901
3766
Microvillus
GO:0005902
1969
Brush border
GO:0005903
1258
Coated pit
GO:0005905
4232
Cell-cell junction
GO:0005911
4763
Adherens junction
GO:0005912
3608
Cell-cell adherens junction
GO:0005913
1728
Zonula adherens
GO:0005915
159
Fascia adherens
GO:0005916
63
Gap junction
GO:0005921
2489
Connexon complex
GO:0005922
2383
Tight junction
GO:0005923
4842
Cell-substrate adherens junction
GO:0005924
130
Focal adhesion
GO:0005925
6398
Muscle tendon junction
GO:0005927
9
Cilium
GO:0005929
4289
Axoneme
GO:0005930
2976
Cell cortex
GO:0005938
4111
Phosphatidylinositol 3-kinase complex
GO:0005942
2320
1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex
GO:0005943
26
1-phosphatidylinositol-4-phosphate 3-kinase, class IB complex
GO:0005944
180
Mitochondrial alpha-ketoglutarate dehydrogenase complex
GO:0005947
1772
CAMP-dependent protein kinase complex
GO:0005952
32
Calcineurin complex
GO:0005955
64
DNA-dependent protein kinase-DNA ligase 4 complex
GO:0005958
17
Phosphorylase kinase complex
GO:0005964
1579
Mitochondrial pyruvate dehydrogenase complex
GO:0005967
143
Rab-protein geranylgeranyltransferase complex
GO:0005968
718
Synaptic vesicle
GO:0008021
4873
Transcription elongation factor complex
GO:0008023
1901
Guanylate cyclase complex, soluble
GO:0008074
64
Voltage-gated potassium channel complex
GO:0008076
2150
Spectrin
GO:0008091
617
Signalosome
GO:0008180
940
Oligosaccharyltransferase complex
GO:0008250
1142
Gamma-tubulin ring complex
GO:0008274
923
Cohesin complex
GO:0008278
11
ATP-sensitive potassium channel complex
GO:0008282
842
F-actin capping protein complex
GO:0008290
29
Integrin complex
GO:0008305
2122
Ionotropic glutamate receptor complex
GO:0008328
1184
IkappaB kinase complex
GO:0008385
911
Proteasome regulatory particle, base subcomplex
GO:0008540
686
Epsilon DNA polymerase complex
GO:0008622
193
Cell outer membrane
GO:0009279
1333
Nucleoid
GO:0009295
9
Acetyl-CoA carboxylase complex
GO:0009317
36
DNA topoisomerase complex (ATP-hydrolyzing)
GO:0009330
9
Glycerol-3-phosphate dehydrogenase complex
GO:0009331
12
External side of plasma membrane
GO:0009897
5175
Internal side of plasma membrane
GO:0009898
2052
Basal plasma membrane
GO:0009925
1579
Cell surface
GO:0009986
6774
Endosome membrane
GO:0010008
5543
Chromocenter
GO:0010369
2371
Cytoplasmic stress granule
GO:0010494
644
Endomembrane system
GO:0012505
4540
Vesicle membrane
GO:0012506
2507
ER to Golgi transport vesicle membrane
GO:0012507
2587
Postsynaptic density
GO:0014069
4301
Junctional sarcoplasmic reticulum membrane
GO:0014701
84
Intercalated disc
GO:0014704
3379
Spectrin-associated cytoskeleton
GO:0014731
942
Longitudinal sarcoplasmic reticulum
GO:0014801
42
Terminal cisterna
GO:0014802
28
Cajal body
GO:0015030
2989
Actin cytoskeleton
GO:0015629
5503
Microtubule cytoskeleton
GO:0015630
4859
Large ribosomal subunit
GO:0015934
536
Small ribosomal subunit
GO:0015935
1222
Dystrophin-associated glycoprotein complex
GO:0016010
2375
Dystroglycan complex
GO:0016011
444
Sarcoglycan complex
GO:0016012
971
Syntrophin complex
GO:0016013
21
Membrane
GO:0016020
9192
Integral to membrane
GO:0016021
9758
Cytoplasmic membrane-bounded vesicle
GO:0016023
4029
Zeta DNA polymerase complex
GO:0016035
10
Procollagen-proline 4-dioxygenase complex
GO:0016222
109
Inclusion body
GO:0016234
771
Aggresome
GO:0016235
3062
Eukaryotic translation initiation factor 4F complex
GO:0016281
323
Eukaryotic 43S preinitiation complex
GO:0016282
31
Basolateral plasma membrane
GO:0016323
5196
Apical plasma membrane
GO:0016324
6048
Apicolateral plasma membrane
GO:0016327
1384
Lateral plasma membrane
GO:0016328
2455
Catenin complex
GO:0016342
355
Nuclear matrix
GO:0016363
3816
RNA-induced silencing complex
GO:0016442
2180
Myosin complex
GO:0016459
2256
Myosin II complex
GO:0016460
1132
Unconventional myosin complex
GO:0016461
966
Proton-transporting two-sector ATPase complex
GO:0016469
341
Vacuolar proton-transporting V-type ATPase complex
GO:0016471
1036
SWI/SNF complex
GO:0016514
65
Sarcoplasm
GO:0016528
34
Sarcoplasmic reticulum
GO:0016529
1663
Sin3 complex
GO:0016580
2664
NuRD complex
GO:0016581
2527
NURF complex
GO:0016589
1553
DNA-directed RNA polymerase II, holoenzyme
GO:0016591
884
Mediator complex
GO:0016592
2073
Cdc73/Paf1 complex
GO:0016593
1319
Flotillin complex
GO:0016600
509
CCAAT-binding factor complex
GO:0016602
737
Nuclear body
GO:0016604
2387
PML body
GO:0016605
3643
Nuclear speck
GO:0016607
4205
Kinesin II complex
GO:0016939
1602
Insulin-like growth factor binding protein complex
GO:0016942
769
Transcriptional repressor complex
GO:0017053
3753
Serine C-palmitoyltransferase complex
GO:0017059
2011
Intracellular cyclic nucleotide activated cation channel complex
GO:0017071
553
Glutamate-cysteine ligase complex
GO:0017109
1043
Golgi transport complex
GO:0017119
1930
N-methyl-D-aspartate selective glutamate receptor complex
GO:0017146
175
SCF ubiquitin ligase complex
GO:0019005
3224
Viral nucleocapsid
GO:0019013
37
Viral capsid
GO:0019028
242
B cell receptor complex
GO:0019815
536
Outer membrane
GO:0019867
478
Extrinsic to plasma membrane
GO:0019897
2283
Extrinsic to membrane
GO:0019898
4143
Cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0019907
24
Symbiont-containing vacuole
GO:0020003
11
Symbiont-containing vacuole membrane
GO:0020005
11
Proteasome accessory complex
GO:0022624
455
Cytosolic large ribosomal subunit
GO:0022625
2991
Cytosolic ribosome
GO:0022626
857
Cytosolic small ribosomal subunit
GO:0022627
2803
CCR4-NOT complex
GO:0030014
386
Myofibril
GO:0030016
125
Sarcomere
GO:0030017
104
Z disc
GO:0030018
3862
Lamellipodium
GO:0030027
5168
Cell junction
GO:0030054
6677
Cell-substrate junction
GO:0030055
37
Hemidesmosome
GO:0030056
67
Desmosome
GO:0030057
2302
Mitochondrial crista
GO:0030061
1465
Membrane coat
GO:0030117
1934
Clathrin coat
GO:0030118
948
AP-type membrane coat adaptor complex
GO:0030119
506
Vesicle coat
GO:0030120
10
AP-1 adaptor complex
GO:0030121
1350
AP-2 adaptor complex
GO:0030122
821
COPI vesicle coat
GO:0030126
1281
COPII vesicle coat
GO:0030127
917
Clathrin coat of trans-Golgi network vesicle
GO:0030130
409
Clathrin adaptor complex
GO:0030131
2842
Clathrin coat of coated pit
GO:0030132
419
Transport vesicle
GO:0030133
3908
ER to Golgi transport vesicle
GO:0030134
1177
Clathrin-coated vesicle
GO:0030136
3943
COPI-coated vesicle
GO:0030137
601
Endocytic vesicle
GO:0030139
3319
Trans-Golgi network transport vesicle
GO:0030140
1493
Secretory granule
GO:0030141
3266
Integral to Golgi membrane
GO:0030173
3457
Filopodium
GO:0030175
3819
Integral to endoplasmic reticulum membrane
GO:0030176
2920
Integral to synaptic vesicle membrane
GO:0030285
31
Dynein complex
GO:0030286
183
Protein phosphatase 4 complex
GO:0030289
394
Junctional membrane complex
GO:0030314
61
T-tubule
GO:0030315
2353
Axon
GO:0030424
4523
Dendrite
GO:0030425
5372
Growth cone
GO:0030426
4422
Smooth muscle contractile fiber
GO:0030485
92
Midbody
GO:0030496
4571
Ribonucleoprotein complex
GO:0030529
3004
Small nuclear ribonucleoprotein complex
GO:0030532
1663
Transport vesicle membrane
GO:0030658
2369
Cytoplasmic vesicle membrane
GO:0030659
4647
Golgi-associated vesicle membrane
GO:0030660
39
Clathrin coated vesicle membrane
GO:0030665
1333
Endocytic vesicle membrane
GO:0030666
3474
Secretory granule membrane
GO:0030667
3281
Clathrin-coated endocytic vesicle membrane
GO:0030669
2159
Phagocytic vesicle membrane
GO:0030670
3877
Synaptic vesicle membrane
GO:0030672
3041
Axolemma
GO:0030673
1164
90S preribosome
GO:0030686
309
Preribosome, small subunit precursor
GO:0030688
297
Noc1p-Noc2p complex
GO:0030690
878
Cortical cytoskeleton
GO:0030863
1473
Cortical actin cytoskeleton
GO:0030864
2774
Rough endoplasmic reticulum membrane
GO:0030867
36
Mre11 complex
GO:0030870
1243
Beta-catenin destruction complex
GO:0030877
390
VCB complex
GO:0030891
927
Mitotic cohesin complex
GO:0030892
1511
Meiotic cohesin complex
GO:0030893
10
Checkpoint clamp complex
GO:0030896
1132
HOPS complex
GO:0030897
3188
Retromer complex
GO:0030904
1525
STAGA complex
GO:0030914
1810
Smc5-Smc6 complex
GO:0030915
812
Glutamyl-tRNA(Gln) amidotransferase complex
GO:0030956
1347
Cortical microtubule cytoskeleton
GO:0030981
19
Intraflagellar transport particle
GO:0030990
1605
Intraflagellar transport particle A
GO:0030991
581
Intraflagellar transport particle B
GO:0030992
3136
Ino80 complex
GO:0031011
81
Extracellular matrix
GO:0031012
4212
Interphase microtubule organizing center
GO:0031021
96
Dense core granule
GO:0031045
72
Nucleocytoplasmic shuttling complex
GO:0031074
749
Nup107-160 complex
GO:0031080
1465
BLOC-1 complex
GO:0031083
2248
Platelet dense granule membrane
GO:0031088
835
Organelle membrane
GO:0031090
900
Platelet alpha granule
GO:0031091
456
Platelet alpha granule membrane
GO:0031092
1570
Platelet alpha granule lumen
GO:0031093
1893
Platelet dense tubular network
GO:0031094
717
Platelet dense tubular network membrane
GO:0031095
296
Septin complex
GO:0031105
689
Pseudopodium
GO:0031143
1130
SNARE complex
GO:0031201
3578
Endoplasmic reticulum Sec complex
GO:0031205
421
SCAR complex
GO:0031209
813
RSF complex
GO:0031213
183
Intrinsic to membrane
GO:0031224
1391
Anchored to membrane
GO:0031225
4147
Intrinsic to plasma membrane
GO:0031226
982
Intrinsic to endoplasmic reticulum membrane
GO:0031227
925
Intrinsic to Golgi membrane
GO:0031228
15
Extrinsic to external side of plasma membrane
GO:0031232
1648
Intrinsic to external side of plasma membrane
GO:0031233
437
Extrinsic to internal side of plasma membrane
GO:0031234
3591
Intrinsic to internal side of plasma membrane
GO:0031235
984
PAN complex
GO:0031251
428
Cell leading edge
GO:0031252
1986
Cell projection membrane
GO:0031253
21
Leading edge membrane
GO:0031256
1155
Lamellipodium membrane
GO:0031258
497
Ndc80 complex
GO:0031262
57
Death-inducing signaling complex
GO:0031264
2327
CD95 death-inducing signaling complex
GO:0031265
2682
Integral to organelle membrane
GO:0031301
616
Intrinsic to endosome membrane
GO:0031302
522
Integral to mitochondrial inner membrane
GO:0031305
3066
Integral to mitochondrial outer membrane
GO:0031307
1601
Extrinsic to endosome membrane
GO:0031313
9
Extrinsic to mitochondrial outer membrane
GO:0031315
271
Anchored to external side of plasma membrane
GO:0031362
1815
Cytoplasmic vesicle
GO:0031410
4914
M band
GO:0031430
939
BRCA1-BARD1 complex
GO:0031436
643
Cullin-RING ubiquitin ligase complex
GO:0031461
144
Cul2-RING ubiquitin ligase complex
GO:0031462
135
Cul3-RING ubiquitin ligase complex
GO:0031463
789
Cul4A-RING ubiquitin ligase complex
GO:0031464
26
Cul4B-RING ubiquitin ligase complex
GO:0031465
15
Cul5-RING ubiquitin ligase complex
GO:0031466
785
Cul7-RING ubiquitin ligase complex
GO:0031467
518
SUMO activating enzyme complex
GO:0031510
11
Motile primary cilium
GO:0031512
252
Nonmotile primary cilium
GO:0031513
981
Motile cilium
GO:0031514
1160
PcG protein complex
GO:0031519
1210
Brush border membrane
GO:0031526
2610
Filopodium membrane
GO:0031527
1915
Microvillus membrane
GO:0031528
1414
AMP-activated protein kinase complex
GO:0031588
484
Centrosomal corona
GO:0031592
19
Neuromuscular junction
GO:0031594
2066
Nuclear proteasome complex
GO:0031595
9
Cytosolic proteasome complex
GO:0031597
17
Spindle pole centrosome
GO:0031616
1550
Nuclear centromeric heterochromatin
GO:0031618
1765
A band
GO:0031672
56
H zone
GO:0031673
18
I band
GO:0031674
142
Early endosome membrane
GO:0031901
3496
Late endosome membrane
GO:0031902
3526
Endosome lumen
GO:0031904
147
TORC1 complex
GO:0031931
36
TORC2 complex
GO:0031932
519
Telomeric heterochromatin
GO:0031933
47
Filamentous actin
GO:0031941
1287
Nuclear membrane
GO:0031965
5602
Mitochondrial membrane
GO:0031966
4568
Nuclear lumen
GO:0031981
128
Vesicle
GO:0031982
5071
Golgi cisterna
GO:0031985
1061
Membrane-bounded vesicle
GO:0031988
28
Interleukin-28 receptor complex
GO:0032002
1439
Early phagosome
GO:0032009
918
Integrator complex
GO:0032039
965
Small-subunit processome
GO:0032040
2959
Guanyl-nucleotide exchange factor complex
GO:0032045
620
Bleb
GO:0032059
31
SMC loading complex
GO:0032116
190
Chromosome passenger complex
GO:0032133
103
Cleavage furrow
GO:0032154
3308
Asymmetric synapse
GO:0032279
39
Symmetric synapse
GO:0032280
11
Alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032281
1854
Mismatch repair complex
GO:0032300
16
MutSbeta complex
GO:0032302
859
Photoreceptor connecting cilium
GO:0032391
2417
Stereocilium
GO:0032420
1469
Stereocilium bundle
GO:0032421
20
Stereocilium bundle tip
GO:0032426
687
Filopodium tip
GO:0032433
1851
Cuticular plate
GO:0032437
34
Activin responsive factor complex
GO:0032444
1103
External side of mitochondrial outer membrane
GO:0032473
11
Cortical endoplasmic reticulum
GO:0032541
17
CURI complex
GO:0032545
1247
Golgi cisterna membrane
GO:0032580
4479
Growth cone membrane
GO:0032584
36
Multivesicular body membrane
GO:0032585
1444
Ruffle membrane
GO:0032587
3930
Trans-Golgi network membrane
GO:0032588
3200
Dendrite membrane
GO:0032590
1799
Dendritic spine membrane
GO:0032591
2052
Integral to mitochondrial membrane
GO:0032592
16
Insulin-responsive compartment
GO:0032593
1345
ELL-EAF complex
GO:0032783
294
SMN complex
GO:0032797
1012
Neuronal cell body membrane
GO:0032809
2111
Dendrite cytoplasm
GO:0032839
1836
Myosin filament
GO:0032982
120
Kainate selective glutamate receptor complex
GO:0032983
42
Macromolecular complex
GO:0032991
531
Protein-DNA complex
GO:0032993
1438
Fc-epsilon receptor I complex
GO:0032998
681
Paranodal junction
GO:0033010
337
Sarcoplasmic reticulum membrane
GO:0033017
174
Sarcoplasmic reticulum lumen
GO:0033018
770
Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0033063
1243
Weibel-Palade body
GO:0033093
543
Endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0033116
3170
Melanosome membrane
GO:0033162
12
Proton-transporting two-sector ATPase complex, catalytic domain
GO:0033178
7
Proton-transporting V-type ATPase, V0 domain
GO:0033179
1031
Proton-transporting V-type ATPase, V1 domain
GO:0033180
913
CAF-1 complex
GO:0033186
1400
Lsd1/2 complex
GO:0033193
139
CORVET complex
GO:0033263
578
Node of Ranvier
GO:0033268
763
Internode region of axon
GO:0033269
18
Paranode region of axon
GO:0033270
1233
Transcription factor TFTC complex
GO:0033276
1090
Eukaryotic 48S preinitiation complex
GO:0033290
27
Chromatoid body
GO:0033391
1284
HULC complex
GO:0033503
209
RDNA heterochromatin
GO:0033553
26
Elongator holoenzyme complex
GO:0033588
539
BRCA2-MAGE-D1 complex
GO:0033593
229
TSC1-TSC2 complex
GO:0033596
15
Pre-autophagosomal structure membrane
GO:0034045
2263
Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0034098
557
Atg1p signaling complex
GO:0034273
1154
Atg12-Atg5-Atg16 complex
GO:0034274
15
Mature chylomicron
GO:0034359
16
Chylomicron remnant
GO:0034360
16
Very-low-density lipoprotein particle
GO:0034361
2281
Low-density lipoprotein particle
GO:0034362
1243
Intermediate-density lipoprotein particle
GO:0034363
16
High-density lipoprotein particle
GO:0034364
1827
Pwp2p-containing subcomplex of 90S preribosome
GO:0034388
18
Nuclear periphery
GO:0034399
644
Autophagic vacuole lumen
GO:0034423
195
Centriolar satellite
GO:0034451
3581
T-UTP complex
GO:0034455
524
UTP-C complex
GO:0034456
1247
BBSome
GO:0034464
829
Endoplasmic reticulum chaperone complex
GO:0034663
45
Alpha2-beta1 integrin complex
GO:0034666
737
Inhibin-betaglycan-ActRII complex
GO:0034673
15
Alpha6-beta4 integrin complex
GO:0034676
11
Alpha8-beta1 integrin complex
GO:0034678
479
Alphav-beta3 integrin complex
GO:0034683
11
Alphav-beta8 integrin complex
GO:0034686
480
AlphaL-beta2 integrin complex
GO:0034687
504
Calcium channel complex
GO:0034704
233
Sodium channel complex
GO:0034706
103
Chloride channel complex
GO:0034707
1806
Methylosome
GO:0034709
929
PICln-Sm protein complex
GO:0034715
920
SMN-Sm protein complex
GO:0034719
1605
Cytosolic aryl hydrocarbon receptor complex
GO:0034752
1111
Nuclear aryl hydrocarbon receptor complex
GO:0034753
1290
Secretory granule lumen
GO:0034774
26
Nuclear meiotic cohesin complex
GO:0034991
13
SUN-KASH complex
GO:0034993
293
Micro-ribonucleoprotein complex
GO:0035068
571
Histone methyltransferase complex
GO:0035097
1948
ESC/E(Z) complex
GO:0035098
2237
PRC1 complex
GO:0035102
34
Exon-exon junction complex
GO:0035145
1397
Rb-E2F complex
GO:0035189
21
Ciliary rootlet
GO:0035253
78
NuA4 histone acetyltransferase complex
GO:0035267
29
Transcriptionally active chromatin
GO:0035327
1222
SPOTS complex
GO:0035339
703
Toll-like receptor 2-Toll-like receptor 6 protein complex
GO:0035355
652
Histone locus body
GO:0035363
1191
UBC13-UEV1A complex
GO:0035370
365
Microtubule plus end
GO:0035371
1985
PR-DUB complex
GO:0035517
17
Azurophil granule membrane
GO:0035577
11
CD40 receptor complex
GO:0035631
1252
Flagellar fibrous sheath
GO:0035686
1037
Macrophage migration inhibitory factor receptor complex
GO:0035692
13
Myelin sheath abaxonal region
GO:0035748
959
Myelin sheath adaxonal region
GO:0035749
164
New growing cell tip
GO:0035841
928
Site of double-strand break
GO:0035861
1263
Ciliary transition zone
GO:0035869
678
Senescence-associated heterochromatin focus
GO:0035985
742
Endolysosome membrane
GO:0036020
693
Endolysosome lumen
GO:0036021
2059
TCTN-B9D complex
GO:0036038
2252
Slit diaphragm
GO:0036057
2057
Cilium basal body
GO:0036064
4130
Sperm flagellum
GO:0036126
612
CatSper complex
GO:0036128
11
Outer dynein arm
GO:0036157
362
NA
GO:0036464
1550
G-protein coupled receptor heterodimeric complex
GO:0038039
17
Interleukin-12 receptor complex
GO:0042022
937
T cell receptor complex
GO:0042101
1358
Alpha-beta T cell receptor complex
GO:0042105
622
Nuclear outer membrane-endoplasmic reticulum membrane network
GO:0042175
709
Nuclear RNA export factor complex
GO:0042272
14
Paraspeckles
GO:0042382
309
Sarcolemma
GO:0042383
3454
Nuclear inclusion body
GO:0042405
1913
Melanosome
GO:0042470
4218
MCM complex
GO:0042555
1908
Specific granule
GO:0042581
1518
Azurophil granule
GO:0042582
1370
Chromaffin granule membrane
GO:0042584
45
Germinal vesicle
GO:0042585
14
Zymogen granule
GO:0042588
866
Zymogen granule membrane
GO:0042589
1461
MHC class I protein complex
GO:0042612
1436
MHC class II protein complex
GO:0042613
807
Photoreceptor outer segment membrane
GO:0042622
1106
Chylomicron
GO:0042627
179
Mast cell granule
GO:0042629
1661
Actomyosin
GO:0042641
1103
Mitochondrial nucleoid
GO:0042645
2720
Mitochondrial intermembrane space protein transporter complex
GO:0042719
668
Presynaptic membrane
GO:0042734
2462
GPI-anchor transamidase complex
GO:0042765
24
Polysomal ribosome
GO:0042788
608
MHC class I peptide loading complex
GO:0042824
1383
TAP complex
GO:0042825
1383
Cell projection
GO:0042995
3190
Neuron projection
GO:0043005
5816
NADPH oxidase complex
GO:0043020
338
Neuronal cell body
GO:0043025
5613
Isoamylase complex
GO:0043033
83
Costamere
GO:0043034
563
Acrosomal matrix
GO:0043159
10
P granule
GO:0043186
1291
ATP-binding cassette (ABC) transporter complex
GO:0043190
345
Initial segment
GO:0043194
82
Terminal button
GO:0043195
2481
Varicosity
GO:0043196
667
Dendritic spine
GO:0043197
3677
Dendritic shaft
GO:0043198
1881
Lysosomal lumen
GO:0043202
4020
Axon hillock
GO:0043203
10
Perikaryon
GO:0043204
3036
Fibril
GO:0043205
11
Myelin sheath
GO:0043209
1780
Compact myelin
GO:0043218
152
Lateral loop
GO:0043219
314
Schmidt-Lanterman incisure
GO:0043220
1663
Intracellular organelle
GO:0043229
703
Intracellular membrane-bounded organelle
GO:0043231
6868
Protein complex
GO:0043234
6385
Receptor complex
GO:0043235
4732
Fanconi anaemia nuclear complex
GO:0043240
1649
Laminin-10 complex
GO:0043259
15
Laminin-11 complex
GO:0043260
15
Contractile fiber
GO:0043292
27
Apoptosome
GO:0043293
1879
Apical junction complex
GO:0043296
912
Interleukin-12 complex
GO:0043514
136
UDP-N-acetylglucosamine transferase complex
GO:0043541
10
Nuclear replication fork
GO:0043596
2228
Delta DNA polymerase complex
GO:0043625
34
Axon terminus
GO:0043679
1279
Cytolytic granule
GO:0044194
17
Fully spanning plasma membrane
GO:0044214
848
Other organism cell
GO:0044216
10
Juxtaparanode region of axon
GO:0044224
544
Cell-cell contact zone
GO:0044291
768
Dendrite terminus
GO:0044292
136
Dendritic growth cone
GO:0044294
18
Axonal growth cone
GO:0044295
69
Cell body
GO:0044297
2712
C-fiber
GO:0044299
864
Cerebellar mossy fiber
GO:0044300
26
Neuron projection terminus
GO:0044306
60
Axonal spine
GO:0044308
18
Neuron spine
GO:0044309
15
Dendritic spine head
GO:0044327
12
Macropinosome
GO:0044354
14
Microspike
GO:0044393
473
Supraspliceosomal complex
GO:0044530
715
NA
GO:0044615
12
NA
GO:0044798
21
Keratin filament
GO:0045095
217
Intermediate filament cytoskeleton
GO:0045111
3837
Pronucleus
GO:0045120
815
Membrane raft
GO:0045121
5507
Myosin I complex
GO:0045160
414
Intercellular bridge
GO:0045171
2153
Apical part of cell
GO:0045177
3890
Basal part of cell
GO:0045178
1586
Apical cortex
GO:0045179
854
Basal cortex
GO:0045180
221
Synapse
GO:0045202
5238
Postsynaptic membrane
GO:0045211
5021
Oxoglutarate dehydrogenase complex
GO:0045252
1302
Pyruvate dehydrogenase complex
GO:0045254
229
Proton-transporting ATP synthase complex, coupling factor F(o)
GO:0045263
564
Tubulin complex
GO:0045298
348
Interleukin-1 receptor complex
GO:0045323
1132
Clathrin-coated endocytic vesicle
GO:0045334
753
Phagocytic vesicle
GO:0045335
3054
U4/U6 x U5 tri-snRNP complex
GO:0046540
564
Intercellular canaliculus
GO:0046581
15
Anchored to plasma membrane
GO:0046658
688
Lipopolysaccharide receptor complex
GO:0046696
8
Pore complex
GO:0046930
767
Activin receptor complex
GO:0048179
14
Set1C/COMPASS complex
GO:0048188
45
Rough endoplasmic reticulum lumen
GO:0048237
2555
Perinuclear region of cytoplasm
GO:0048471
6881
Signal recognition particle
GO:0048500
95
Presynaptic active zone
GO:0048786
2570
Presynaptic active zone membrane
GO:0048787
176
Presynaptic cytoskeletal matrix assembled at active zones
GO:0048788
48
Spindle midzone
GO:0051233
862
Cell tip
GO:0051286
17
Recycling endosome
GO:0055037
4396
Recycling endosome membrane
GO:0055038
2984
Neurofilament cytoskeleton
GO:0060053
25
Excitatory synapse
GO:0060076
974
Inhibitory synapse
GO:0060077
81
Kinocilium
GO:0060091
178
Cilium membrane
GO:0060170
2411
Stereocilium membrane
GO:0060171
776
Cell pole
GO:0060187
25
Clathrin sculpted acetylcholine transport vesicle membrane
GO:0060201
21
Clathrin sculpted glutamate transport vesicle membrane
GO:0060203
26
Cytoplasmic membrane-bounded vesicle lumen
GO:0060205
10
Photoreceptor inner segment membrane
GO:0060342
27
Clathrin sculpted gamma-aminobutyric acid transport vesicle membrane
GO:0061202
41
NA
GO:0061474
10
NA
GO:0061618
13
Transforming growth factor beta receptor homodimeric complex
GO:0070022
28
Synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex
GO:0070032
9
Synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex
GO:0070033
12
Synaptobrevin 2-SNAP-25-syntaxin-1a complex
GO:0070044
10
Extracellular vesicular exosome
GO:0070062
9166
Clathrin sculpted monoamine transport vesicle membrane
GO:0070083
26
Ciliary neurotrophic factor receptor complex
GO:0070110
1363
Stn1-Ten1 complex
GO:0070188
12
Growth hormone receptor complex
GO:0070195
638
Exocytic vesicle
GO:0070382
1121
Nonhomologous end joining complex
GO:0070419
225
Shc-EGFR complex
GO:0070435
11
Grb2-EGFR complex
GO:0070436
689
Elongin complex
GO:0070449
615
SAGA-type complex
GO:0070461
1297
Respiratory chain
GO:0070469
2621
BRCA1-A complex
GO:0070531
1022
BRISC complex
GO:0070552
202
SWI/SNF-type complex
GO:0070603
47
MLL5-L complex
GO:0070688
17
FHF complex
GO:0070695
2996
Interleukin-23 complex
GO:0070743
134
Pre-snoRNP complex
GO:0070761
414
Gamma-secretase complex
GO:0070765
637
PAS complex
GO:0070772
19
MOZ/MORF histone acetyltransferase complex
GO:0070776
41
Tertiary granule
GO:0070820
8
Tertiary granule membrane
GO:0070821
210
Paraferritin complex
GO:0070826
591
Cell body fiber
GO:0070852
948
SOSS complex
GO:0070876
1060
CRD-mediated mRNA stability complex
GO:0070937
229
Contractile ring
GO:0070938
1086
ULK1-ATG13-FIP200 complex
GO:0070969
857
Endoplasmic reticulum exit site
GO:0070971
1915
U4/U6 snRNP
GO:0071001
309
Precatalytic spliceosome
GO:0071011
16
Catalytic step 2 spliceosome
GO:0071013
3267
Alphav-beta3 integrin-vitronectin complex
GO:0071062
19
SMAD protein complex
GO:0071141
1447
SMAD2-SMAD3 protein complex
GO:0071144
712
WASH complex
GO:0071203
875
Histone pre-mRNA 3'end processing complex
GO:0071204
389
MLL1 complex
GO:0071339
944
Invadopodium
GO:0071437
246
Invadopodium membrane
GO:0071438
137
Clathrin complex
GO:0071439
403
Integral to cytosolic side of endoplasmic reticulum membrane
GO:0071458
223
Pi-body
GO:0071546
977
PiP-body
GO:0071547
19
Integral to lumenal side of endoplasmic reticulum membrane
GO:0071556
2173
NpBAF complex
GO:0071564
53
NBAF complex
GO:0071565
60
Integral to external side of plasma membrane
GO:0071575
876
Neuronal ribonucleoprotein granule
GO:0071598
265
Endocytic vesicle lumen
GO:0071682
217
Endoplasmic reticulum tubular network
GO:0071782
12
LUBAC complex
GO:0071797
799
MMXD complex
GO:0071817
1006
FANCM-MHF complex
GO:0071821
8
Prominosome
GO:0071914
472
XPC complex
GO:0071942
395
Cell periphery
GO:0071944
1468
Elastic fiber
GO:0071953
13
PTW/PP1 phosphatase complex
GO:0072357
1071
Primary cilium
GO:0072372
3924
Perineuronal net
GO:0072534
15
Interleukin-23 receptor complex
GO:0072536
937
IPAF inflammasome complex
GO:0072557
9
NLRP1 inflammasome complex
GO:0072558
13
NLRP3 inflammasome complex
GO:0072559
1233
Blood microparticle
GO:0072562
2895
Endothelial microparticle
GO:0072563
10
TRNA-splicing ligase complex
GO:0072669
568
Mitotic spindle
GO:0072686
2353
CUL4 RING ubiquitin ligase complex
GO:0080008
1783
NA
GO:0090498
1603
NA
GO:0090534
44
NA
GO:0090543
621
NA
GO:0090575
511
MPP7-DLG1-LIN7 complex
GO:0097025
943
Perinuclear endoplasmic reticulum
GO:0097038
1414
Synaptic membrane
GO:0097060
289
Bcl-2 family protein complex
GO:0097136
9
Shu complex
GO:0097196
685
Tetraspanin-enriched microdomain
GO:0097197
1299
Alveolar lamellar body
GO:0097208
33
Epidermal lamellar body
GO:0097209
584
Sperm midpiece
GO:0097225
384
Sperm mitochondrial sheath
GO:0097226
192
Sperm principal piece
GO:0097228
302
Alveolar lamellar body membrane
GO:0097233
562
NA
GO:0097342
2713
NA
GO:0097361
1005
NA
GO:0097362
396
NA
GO:0097381
2495
NA
GO:0097413
797
NA
GO:0097418
11
NA
GO:0097422
8
NA
GO:0097427
14
NA
GO:0097431
10
NA
GO:0097440
34
NA
GO:0097443
192
NA
GO:0097449
72
NA
GO:0097451
257
NA
GO:0097481
357
NA
GO:0097504
1012
NA
GO:0097539
10
NA
GO:0097541
194
NA
GO:0097542
608
NA
GO:0097546
1155
NA
GO:0097629
924
NA
GO:0097632
924
NA
GO:0098536
13
NA
GO:0098559
953
NA
GO:1902495
556
NA
GO:1902711
57
NA
GO:1990023
25
NA
GO:1990077
202
NA
GO:1990111
17
NA
GO:1990246
152
NA
GO:1990393
716
NA
GO:1990452
802